Weba single integer or numeric value specifying the number of permutations for deriving p-values in GSEA. a single character value specifying to return only a score (if set as "score"), or all the necessary elements to make a plot (if "graph") (see "gseaPlot" for more details). WebGene set enrichment analysis (GSEA) is a widely used technique in transcriptomic data analysis that uses a database of predefined gene sets to rank lists of genes from …

MD Anderson Cancer Center

WebOct 25, 2005 · We demonstrate how GSEA yields insights into several cancer-related data sets, including leukemia and lung cancer. Notably, where single-gene analysis finds little similarity between two independent studies of patient survival in lung cancer, GSEA reveals many biological pathways in common. The GSEA method is embodied in a freely … WebApr 11, 2024 · The GEO30122 dataset was examined using GSEA to characterize the functional genome associated with diabetic nephropathy. Finally, a total of 226 datasets met the FDR Q value <0.25 and the p. adjust value <0.05. We selected 14 of these pathways that met NES ≥ 2.0 and the adjusted p-value < 0.05 for GSEA enrichment analysis to be … hematuria aepap

CancerStemCellProject/VeroniqueVoisin/AdditionalResources/GSEA …

WebThe Great Lakes Surface Environmental Analysis (GLSEA) is a digital map of the Great Lakes surface water temperature and ice cover which is produced daily at the NOAA … GSEA uses complicated statistics, so it requires a computer program to run the calculations. GSEA has become standard practice, and there are many websites and downloadable programs that will provide the data sets and run the analysis. Multi-Ontology Enrichment Tool (MOET): MOET is a web-based ontology analysis tool that provides functionality for multiple ontologies, including Disease, GO, Pathway, Phenotype, and … evelyn kopatz